Scott: Created page with ' #!/bin/bash usage () { echo echo "Usage:" echo " `basename $0` " echo " This script searches through for DICOM files" echo " (e.…'

2011-01-31T17:40:09Z

Created page with '<source lang="bash"> #!/bin/bash usage () { echo echo "Usage:" echo " `basename $0` <dicom dir>" echo " This script searches through <dicom dir> for DICOM files" echo " (e.…'

New page

<source lang="bash">
#!/bin/bash

usage () {
echo
echo "Usage:"
echo " `basename $0` <dicom dir>"
echo " This script searches through <dicom dir> for DICOM files"
echo " (e.g. 00001.dcm). It creates a new directory called"
echo " <dicom dir>-analyze and places converted Analyze files in"
echo " corresponding locations there."
echo
exit 1
}

if [[ ! -x `which dicom2analyze` ]]; then
echo "ERROR: can't find dicom2analyze binary."
exit 1
fi

# check number of arguments
if (( $# != 1)); then
usage
fi

# check dicom_dir
dicom_dir_input=$1
if [[ ! -d $dicom_dir_input ]]; then
echo
echo " ERROR: $dicom_dir_input is not a valid directory"
usage
fi

# move to parent directory
cd $dicom_dir_input/..
dicom_dir=`basename $dicom_dir_input`
analyze_dir="${dicom_dir}-analyze"

# create parallel directory structure
for dicom_subdir in `find $dicom_dir -name *.dcm -exec dirname {} \; | sort -u`
do
newdir=${analyze_dir}${dicom_subdir#"$dicom_dir"}
mkdir -p $newdir
if (( $? != 0 )); then
echo
echo "ERROR: failed to create $newdir."
echo "Do you have write permissions here?"
usage
fi
done

# create analyze files
for dicom_file in `find $dicom_dir -name *.dcm -print`
do
analyze_prefix=${analyze_dir}${dicom_file#"$dicom_dir"}
`dicom2analyze $dicom_file $analyze_prefix`
if (( $? != 0 )); then
echo
echo "ERROR: failed to convert $dicom_file"
echo "Please contact the system administrator."
echo
exit 1
fi
done

exit 0
</source>

Dicom dir to analyze - Revision history

Scott: Created page with ' #!/bin/bash usage () { echo echo "Usage:" echo " `basename $0` " echo " This script searches through for DICOM files" echo " (e.…'